Loop J5_4Z3S

3D structure

PDB id: 4Z3S (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å

Loop

Sequence: AAAAGACCC*GGGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 39 nucleotides
Bulged bases: 4Z3S|1|2A|A|2448, 4Z3S|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4Z3S|1|2A|A|2057
4Z3S|1|2A|A|2058
4Z3S|1|2A|A|2059
4Z3S|1|2A|A|2060
4Z3S|1|2A|G|2061
4Z3S|1|2A|A|2062
4Z3S|1|2A|C|2063
4Z3S|1|2A|C|2064
4Z3S|1|2A|C|2065
*
4Z3S|1|2A|G|2445
4Z3S|1|2A|G|2446
4Z3S|1|2A|G|2447
4Z3S|1|2A|A|2448
4Z3S|1|2A|U|2449
4Z3S|1|2A|A|2450
4Z3S|1|2A|A|2451
4Z3S|1|2A|C|2452
4Z3S|1|2A|A|2453
*
4Z3S|1|2A|U|2500
4Z3S|1|2A|C|2501
4Z3S|1|2A|G|2502
4Z3S|1|2A|2MA|2503
4Z3S|1|2A|U|2504
4Z3S|1|2A|G|2505
4Z3S|1|2A|U|2506
4Z3S|1|2A|C|2507
*
4Z3S|1|2A|G|2582
4Z3S|1|2A|G|2583
4Z3S|1|2A|U|2584
4Z3S|1|2A|U|2585
4Z3S|1|2A|C|2586
4Z3S|1|2A|A|2587
4Z3S|1|2A|G|2588
*
4Z3S|1|2A|C|2606
4Z3S|1|2A|G|2607
4Z3S|1|2A|G|2608
4Z3S|1|2A|U|2609
4Z3S|1|2A|C|2610
4Z3S|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2w: Transfer RNA; tRNA
Chain 2x: Transfer RNA; tRNA

J5_4Z3S_016