J5_4Z8C_006
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4Z8C|1|1A|A|2083, 4Z8C|1|1A|A|2459, 4Z8C|1|1A|U|2460, 4Z8C|1|1A|U|2517, 4Z8C|1|1A|U|2596, 4Z8C|1|1A|U|2620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Z8C|1|1A|A|2078
4Z8C|1|1A|A|2079
4Z8C|1|1A|A|2080
4Z8C|1|1A|A|2081
4Z8C|1|1A|G|2082
4Z8C|1|1A|A|2083
4Z8C|1|1A|C|2084
4Z8C|1|1A|C|2085
*
4Z8C|1|1A|G|2457
4Z8C|1|1A|G|2458
4Z8C|1|1A|A|2459
4Z8C|1|1A|U|2460
4Z8C|1|1A|A|2461
4Z8C|1|1A|A|2462
4Z8C|1|1A|C|2463
4Z8C|1|1A|A|2464
*
4Z8C|1|1A|U|2511
4Z8C|1|1A|C|2512
4Z8C|1|1A|G|2513
4Z8C|1|1A|A|2514
4Z8C|1|1A|U|2515
4Z8C|1|1A|G|2516
4Z8C|1|1A|U|2517
4Z8C|1|1A|C|2518
*
4Z8C|1|1A|G|2593
4Z8C|1|1A|G|2594
4Z8C|1|1A|U|2595
4Z8C|1|1A|U|2596
4Z8C|1|1A|C|2597
4Z8C|1|1A|A|2598
4Z8C|1|1A|G|2599
*
4Z8C|1|1A|C|2617
4Z8C|1|1A|G|2618
4Z8C|1|1A|G|2619
4Z8C|1|1A|U|2620
4Z8C|1|1A|C|2621
4Z8C|1|1A|U|2622
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1D
- 50S ribosomal protein L2
- Chain 1E
- 50S ribosomal protein L3
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1W
- 50S ribosomal protein L22
- Chain 1x
- Transfer RNA; tRNA
- Chain 1z
- Oncocin
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