J5_4Z8C_014

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

4Z8C|1|2A|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Z8C|1|2A|C|623
4Z8C|1|2A|G|624
4Z8C|1|2A|A|625
4Z8C|1|2A|G|626
*
4Z8C|1|2A|C|648
4Z8C|1|2A|G|649
4Z8C|1|2A|U|650
4Z8C|1|2A|A|651
4Z8C|1|2A|G|652
*
4Z8C|1|2A|C|659
4Z8C|1|2A|G|660
4Z8C|1|2A|A|661
4Z8C|1|2A|G|662
*
4Z8C|1|2A|C|674
4Z8C|1|2A|G|675
4Z8C|1|2A|C|676
4Z8C|1|2A|A|677
4Z8C|1|2A|A|678
4Z8C|1|2A|G|679
*
4Z8C|1|2A|C|698
4Z8C|1|2A|A|699
4Z8C|1|2A|A|700
4Z8C|1|2A|A|701
4Z8C|1|2A|G|702

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15