J5_5A2Q_001

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

5A2Q|1|2|G|589, 5A2Q|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|C|30
5A2Q|1|2|U|31
5A2Q|1|2|U|32
5A2Q|1|2|G|33
5A2Q|1|2|U|34
*
5A2Q|1|2|A|521
5A2Q|1|2|A|522
5A2Q|1|2|A|523
5A2Q|1|2|U|524
5A2Q|1|2|A|525
5A2Q|1|2|A|526
5A2Q|1|2|C|527
*
5A2Q|1|2|G|558
5A2Q|1|2|G|559
5A2Q|1|2|A|560
5A2Q|1|2|A|561
5A2Q|1|2|U|562
5A2Q|1|2|G|563
5A2Q|1|2|A|564
5A2Q|1|2|G|565
*
5A2Q|1|2|C|585
5A2Q|1|2|G|586
5A2Q|1|2|A|587
5A2Q|1|2|G|588
5A2Q|1|2|G|589
5A2Q|1|2|A|590
5A2Q|1|2|U|591
5A2Q|1|2|C|592
5A2Q|1|2|C|593
5A2Q|1|2|A|594
5A2Q|1|2|U|595
*
5A2Q|1|2|A|641
5A2Q|1|2|U|642
5A2Q|1|2|A|643
5A2Q|1|2|G|644

Current chains

Chain 2

18S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN US4

Chain X

RIBOSOMAL PROTEIN US12

Chain e

RIBOSOMAL PROTEIN ES30