J5_5A2Q_004

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCUCG*CGGG*UG*CCG*CG

Length

17 nucleotides

Bulged bases

5A2Q|1|2|G|126, 5A2Q|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|C|125
5A2Q|1|2|G|126
5A2Q|1|2|C|127
5A2Q|1|2|U|128
5A2Q|1|2|C|129
5A2Q|1|2|G|130
*
5A2Q|1|2|C|182
5A2Q|1|2|G|183
5A2Q|1|2|G|184
5A2Q|1|2|G|185
*
5A2Q|1|2|U|214
5A2Q|1|2|G|215
*
5A2Q|1|2|C|310
5A2Q|1|2|C|311
5A2Q|1|2|G|312
*
5A2Q|1|2|C|337
5A2Q|1|2|G|338

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain G

RIBOSOMAL PROTEIN ES6

Chain I

RIBOSOMAL PROTEIN ES8