J5_5AA0_002
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GCGU*AGUGCGAAUG
- Length
- 28 nucleotides
- Bulged bases
- 5AA0|1|AA|U|811||||P_1, 5AA0|1|AA|G|1248||||P_1, 5AA0|1|AA|G|1252||||P_1, 5AA0|1|AA|A|1253||||P_1, 5AA0|1|AA|U|1255||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AA0|1|AA|C|584||||P_1
5AA0|1|AA|G|585||||P_1
5AA0|1|AA|A|586||||P_1
5AA0|1|AA|C|587||||P_1
5AA0|1|AA|U|588||||P_1
5AA0|1|AA|C|589||||P_1
*
5AA0|1|AA|G|668||||P_1
5AA0|1|AA|G|669||||P_1
5AA0|1|AA|A|670||||P_1
5AA0|1|AA|C|671||||P_1
*
5AA0|1|AA|G|809||||P_1
5AA0|1|AA|U|810||||P_1
5AA0|1|AA|U|811||||P_1
5AA0|1|AA|C|812||||P_1
*
5AA0|1|AA|G|1195||||P_1
5AA0|1|AA|C|1196||||P_1
5AA0|1|AA|G|1197||||P_1
5AA0|1|AA|U|1198||||P_1
*
5AA0|1|AA|A|1247||||P_1
5AA0|1|AA|G|1248||||P_1
5AA0|1|AA|U|1249||||P_1
5AA0|1|AA|G|1250||||P_1
5AA0|1|AA|C|1251||||P_1
5AA0|1|AA|G|1252||||P_1
5AA0|1|AA|A|1253||||P_1
5AA0|1|AA|A|1254||||P_1
5AA0|1|AA|U|1255||||P_1
5AA0|1|AA|G|1256||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AF
- 50S ribosomal protein L4
- Chain AM
- 50S ribosomal protein L15
- Chain AR
- 50S ribosomal protein L20
- Chain AS
- 50S ribosomal protein L21
- Chain Ae
- 50S ribosomal protein L35
Coloring options: