J5_5AA0_004
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- AAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCU
- Length
- 43 nucleotides
- Bulged bases
- 5AA0|1|AA|A|2062||||P_1, 5AA0|1|AA|A|2448||||P_1, 5AA0|1|AA|U|2449||||P_1, 5AA0|1|AA|A|2497||||P_1, 5AA0|1|AA|G|2505||||P_1, 5AA0|1|AA|C|2586||||P_1, 5AA0|1|AA|A|2587||||P_1, 5AA0|1|AA|U|2609||||P_1, 5AA0|1|AA|C|2610||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AA0|1|AA|A|2057||||P_1
5AA0|1|AA|A|2058||||P_1
5AA0|1|AA|A|2059||||P_1
5AA0|1|AA|A|2060||||P_1
5AA0|1|AA|G|2061||||P_1
5AA0|1|AA|A|2062||||P_1
5AA0|1|AA|C|2063||||P_1
5AA0|1|AA|C|2064||||P_1
*
5AA0|1|AA|G|2446||||P_1
5AA0|1|AA|G|2447||||P_1
5AA0|1|AA|A|2448||||P_1
5AA0|1|AA|U|2449||||P_1
5AA0|1|AA|A|2450||||P_1
5AA0|1|AA|A|2451||||P_1
5AA0|1|AA|C|2452||||P_1
5AA0|1|AA|A|2453||||P_1
5AA0|1|AA|G|2454||||P_1
5AA0|1|AA|G|2455||||P_1
*
5AA0|1|AA|C|2496||||P_1
5AA0|1|AA|A|2497||||P_1
5AA0|1|AA|C|2498||||P_1
5AA0|1|AA|C|2499||||P_1
5AA0|1|AA|U|2500||||P_1
5AA0|1|AA|C|2501||||P_1
5AA0|1|AA|G|2502||||P_1
5AA0|1|AA|A|2503||||P_1
5AA0|1|AA|U|2504||||P_1
5AA0|1|AA|G|2505||||P_1
5AA0|1|AA|U|2506||||P_1
5AA0|1|AA|C|2507||||P_1
*
5AA0|1|AA|G|2582||||P_1
5AA0|1|AA|G|2583||||P_1
5AA0|1|AA|U|2584||||P_1
5AA0|1|AA|U|2585||||P_1
5AA0|1|AA|C|2586||||P_1
5AA0|1|AA|A|2587||||P_1
5AA0|1|AA|G|2588||||P_1
*
5AA0|1|AA|C|2606||||P_1
5AA0|1|AA|G|2607||||P_1
5AA0|1|AA|G|2608||||P_1
5AA0|1|AA|U|2609||||P_1
5AA0|1|AA|C|2610||||P_1
5AA0|1|AA|U|2611||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AM
- 50S ribosomal protein L15
- Chain AN
- 50S ribosomal protein L16
- Chain AX
- 50S ribosomal protein L27
- Chain Ab
- 50S ribosomal protein L32
- Chain BD
- Transfer RNA; tRNA
- Chain BZ
- GTP-binding protein
Coloring options: