J5_5ADY_001

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5ADY|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5ADY_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1743

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ADY|1|B|C|47
5ADY|1|B|G|48
5ADY|1|B|A|49
5ADY|1|B|U|50
5ADY|1|B|G|51
5ADY|1|B|A|52
5ADY|1|B|A|53
5ADY|1|B|G|54
*
5ADY|1|B|C|116
5ADY|1|B|G|117
5ADY|1|B|A|118
5ADY|1|B|A|119
5ADY|1|B|U|120
5ADY|1|B|G|121
*
5ADY|1|B|C|130
5ADY|1|B|A|131
*
5ADY|1|B|U|148
5ADY|1|B|A|149
5ADY|1|B|U|150
*
5ADY|1|B|A|176
5ADY|1|B|G|177
5ADY|1|B|G|178

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34