J5_5AFI_005
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 5AFI|1|A|A|2062||||P_1, 5AFI|1|A|A|2448||||P_1, 5AFI|1|A|H2U|2449||||P_1, 5AFI|1|A|U|2506||||P_1, 5AFI|1|A|U|2609||||P_1
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AFI|1|A|G|2057||||P_1
5AFI|1|A|A|2058||||P_1
5AFI|1|A|A|2059||||P_1
5AFI|1|A|A|2060||||P_1
5AFI|1|A|G|2061||||P_1
5AFI|1|A|A|2062||||P_1
5AFI|1|A|C|2063||||P_1
5AFI|1|A|C|2064||||P_1
*
5AFI|1|A|G|2446||||P_1
5AFI|1|A|G|2447||||P_1
5AFI|1|A|A|2448||||P_1
5AFI|1|A|H2U|2449||||P_1
5AFI|1|A|A|2450||||P_1
5AFI|1|A|A|2451||||P_1
5AFI|1|A|C|2452||||P_1
5AFI|1|A|A|2453||||P_1
*
5AFI|1|A|U|2500||||P_1
5AFI|1|A|C|2501||||P_1
5AFI|1|A|G|2502||||P_1
5AFI|1|A|2MA|2503||||P_1
5AFI|1|A|PSU|2504||||P_1
5AFI|1|A|G|2505||||P_1
5AFI|1|A|U|2506||||P_1
5AFI|1|A|C|2507||||P_1
*
5AFI|1|A|G|2582||||P_1
5AFI|1|A|G|2583||||P_1
5AFI|1|A|U|2584||||P_1
5AFI|1|A|U|2585||||P_1
5AFI|1|A|U|2586||||P_1
5AFI|1|A|A|2587||||P_1
5AFI|1|A|G|2588||||P_1
*
5AFI|1|A|C|2606||||P_1
5AFI|1|A|G|2607||||P_1
5AFI|1|A|G|2608||||P_1
5AFI|1|A|U|2609||||P_1
5AFI|1|A|C|2610||||P_1
5AFI|1|A|C|2611||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain v
- Transfer RNA; tRNA
Coloring options: