J5_5AFI_007
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AFI_007 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.077
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5AFI|1|a|C|36||||P_1
5AFI|1|a|U|37||||P_1
5AFI|1|a|G|38||||P_1
5AFI|1|a|G|39||||P_1
*
5AFI|1|a|C|403||||P_1
5AFI|1|a|G|404||||P_1
5AFI|1|a|U|405||||P_1
5AFI|1|a|G|406||||P_1
*
5AFI|1|a|C|436||||P_1
5AFI|1|a|U|437||||P_1
5AFI|1|a|U|438||||P_1
5AFI|1|a|U|439||||P_1
5AFI|1|a|C|440||||P_1
*
5AFI|1|a|G|497||||P_1
5AFI|1|a|A|498||||P_1
5AFI|1|a|A|499||||P_1
5AFI|1|a|G|500||||P_1
*
5AFI|1|a|C|545||||P_1
5AFI|1|a|A|546||||P_1
5AFI|1|a|A|547||||P_1
5AFI|1|a|G|548||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain z
- Elongation factor Tu 2
Coloring options: