J5_5AFI_009
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5AFI|1|a|A|109||||P_1, 5AFI|1|a|C|352||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AFI_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1061
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|a|C|58||||P_1
5AFI|1|a|A|59||||P_1
5AFI|1|a|A|60||||P_1
5AFI|1|a|G|61||||P_1
*
5AFI|1|a|C|106||||P_1
5AFI|1|a|G|107||||P_1
5AFI|1|a|G|108||||P_1
5AFI|1|a|A|109||||P_1
5AFI|1|a|C|110||||P_1
5AFI|1|a|G|111||||P_1
5AFI|1|a|G|112||||P_1
5AFI|1|a|G|113||||P_1
*
5AFI|1|a|C|314||||P_1
5AFI|1|a|A|315||||P_1
5AFI|1|a|C|316||||P_1
*
5AFI|1|a|G|337||||P_1
5AFI|1|a|A|338||||P_1
5AFI|1|a|C|339||||P_1
*
5AFI|1|a|G|350||||P_1
5AFI|1|a|G|351||||P_1
5AFI|1|a|C|352||||P_1
5AFI|1|a|A|353||||P_1
5AFI|1|a|G|354||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
- Chain z
- Elongation factor Tu 2
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