J5_5AJ4_005
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 5AJ4|1|BA|A|1055, 5AJ4|1|BA|A|1269, 5AJ4|1|BA|U|1270, 5AJ4|1|BA|G|1326, 5AJ4|1|BA|U|1327, 5AJ4|1|BA|U|1430, 5AJ4|1|BA|U|1431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ4|1|BA|A|1050
5AJ4|1|BA|G|1051
5AJ4|1|BA|A|1052
5AJ4|1|BA|A|1053
5AJ4|1|BA|G|1054
5AJ4|1|BA|A|1055
5AJ4|1|BA|C|1056
5AJ4|1|BA|C|1057
*
5AJ4|1|BA|G|1267
5AJ4|1|BA|G|1268
5AJ4|1|BA|A|1269
5AJ4|1|BA|U|1270
5AJ4|1|BA|A|1271
5AJ4|1|BA|A|1272
5AJ4|1|BA|C|1273
5AJ4|1|BA|A|1274
*
5AJ4|1|BA|U|1321
5AJ4|1|BA|C|1322
5AJ4|1|BA|G|1323
5AJ4|1|BA|A|1324
5AJ4|1|BA|U|1325
5AJ4|1|BA|G|1326
5AJ4|1|BA|U|1327
5AJ4|1|BA|U|1328
*
5AJ4|1|BA|A|1403
5AJ4|1|BA|G|1404
5AJ4|1|BA|U|1405
5AJ4|1|BA|U|1406
5AJ4|1|BA|C|1407
5AJ4|1|BA|A|1408
5AJ4|1|BA|G|1409
*
5AJ4|1|BA|C|1427
5AJ4|1|BA|G|1428
5AJ4|1|BA|G|1429
5AJ4|1|BA|U|1430
5AJ4|1|BA|U|1431
5AJ4|1|BA|U|1432
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain AV
- P-SITE AND A-SITE TRNA
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain B5
- MITORIBOSOMAL PROTEIN BL32M, MRPL32
- Chain BE
- MITORIBOSOMAL PROTEIN UL3M, MRPL3
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain BQ
- MITORIBOSOMAL PROTEIN UL16M, MRPL16
- Chain BW
- MITORIBOSOMAL PROTEIN UL22M, MRPL22
Coloring options: