J5_5APO_001
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5APO|1|8|U|38||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APO_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.062
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|A|20||||P_1
5APO|1|5|G|21||||P_1
5APO|1|5|G|22||||P_1
*
5APO|1|8|C|35||||P_1
5APO|1|8|G|36||||P_1
5APO|1|8|A|37||||P_1
5APO|1|8|U|38||||P_1
5APO|1|8|G|39||||P_1
5APO|1|8|A|40||||P_1
5APO|1|8|A|41||||P_1
5APO|1|8|G|42||||P_1
*
5APO|1|8|U|102||||P_1
5APO|1|8|G|103||||P_1
5APO|1|8|A|104||||P_1
5APO|1|8|A|105||||P_1
5APO|1|8|C|106||||P_1
5APO|1|8|G|107||||P_1
*
5APO|1|8|C|115||||P_1
5APO|1|8|G|116||||P_1
*
5APO|1|8|C|137||||P_1
5APO|1|8|A|138||||P_1
5APO|1|8|U|139||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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