J5_5APO_002
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5APO|1|5|U|1436||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APO_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0586
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|G|658||||P_1
5APO|1|5|G|659||||P_1
5APO|1|5|A|660||||P_1
5APO|1|5|G|661||||P_1
5APO|1|5|U|662||||P_1
5APO|1|5|C|663||||P_1
*
5APO|1|5|G|799||||P_1
5APO|1|5|G|800||||P_1
5APO|1|5|A|801||||P_1
5APO|1|5|C|802||||P_1
*
5APO|1|5|G|941||||P_1
5APO|1|5|U|942||||P_1
5APO|1|5|U|943||||P_1
5APO|1|5|C|944||||P_1
*
5APO|1|5|G|1375||||P_1
5APO|1|5|C|1376||||P_1
*
5APO|1|5|G|1431||||P_1
5APO|1|5|C|1432||||P_1
5APO|1|5|A|1433||||P_1
5APO|1|5|G|1434||||P_1
5APO|1|5|A|1435||||P_1
5APO|1|5|U|1436||||P_1
5APO|1|5|C|1437||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain e
- 60S ribosomal protein L32
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
Coloring options: