J5_5APO_003
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 5APO|1|5|U|719||||P_1, 5APO|1|5|A|784||||P_1, 5APO|1|5|G|785||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APO_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0863
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|C|675||||P_1
5APO|1|5|G|676||||P_1
5APO|1|5|A|677||||P_1
5APO|1|5|G|678||||P_1
*
5APO|1|5|C|702||||P_1
5APO|1|5|G|703||||P_1
5APO|1|5|U|704||||P_1
5APO|1|5|A|705||||P_1
5APO|1|5|A|706||||P_1
*
5APO|1|5|U|713||||P_1
5APO|1|5|G|714||||P_1
5APO|1|5|A|715||||P_1
5APO|1|5|A|716||||P_1
5APO|1|5|C|717||||P_1
5APO|1|5|G|718||||P_1
5APO|1|5|U|719||||P_1
5APO|1|5|A|720||||P_1
5APO|1|5|G|721||||P_1
*
5APO|1|5|C|749||||P_1
5APO|1|5|G|750||||P_1
5APO|1|5|A|751||||P_1
*
5APO|1|5|U|782||||P_1
5APO|1|5|A|783||||P_1
5APO|1|5|A|784||||P_1
5APO|1|5|G|785||||P_1
5APO|1|5|A|786||||P_1
5APO|1|5|G|787||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36-A
Coloring options: