J5_5APO_005
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 5APO|1|5|A|2817||||P_1, 5APO|1|5|U|2818||||P_1, 5APO|1|5|U|2873||||P_1, 5APO|1|5|U|2954||||P_1, 5APO|1|5|U|2978||||P_1, 5APO|1|5|U|2979||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|A|2399||||P_1
5APO|1|5|G|2400||||P_1
5APO|1|5|A|2401||||P_1
5APO|1|5|A|2402||||P_1
5APO|1|5|G|2403||||P_1
5APO|1|5|A|2404||||P_1
5APO|1|5|C|2405||||P_1
5APO|1|5|C|2406||||P_1
*
5APO|1|5|G|2815||||P_1
5APO|1|5|G|2816||||P_1
5APO|1|5|A|2817||||P_1
5APO|1|5|U|2818||||P_1
5APO|1|5|A|2819||||P_1
5APO|1|5|A|2820||||P_1
5APO|1|5|C|2821||||P_1
5APO|1|5|U|2822||||P_1
5APO|1|5|G|2823||||P_1
*
5APO|1|5|C|2867||||P_1
5APO|1|5|U|2868||||P_1
5APO|1|5|U|2869||||P_1
5APO|1|5|C|2870||||P_1
5APO|1|5|G|2871||||P_1
5APO|1|5|A|2872||||P_1
5APO|1|5|U|2873||||P_1
5APO|1|5|G|2874||||P_1
5APO|1|5|U|2875||||P_1
*
5APO|1|5|G|2952||||P_1
5APO|1|5|U|2953||||P_1
5APO|1|5|U|2954||||P_1
5APO|1|5|U|2955||||P_1
5APO|1|5|A|2956||||P_1
5APO|1|5|G|2957||||P_1
*
5APO|1|5|U|2975||||P_1
5APO|1|5|A|2976||||P_1
5APO|1|5|G|2977||||P_1
5APO|1|5|U|2978||||P_1
5APO|1|5|U|2979||||P_1
5APO|1|5|U|2980||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- 60S ribosomal protein L29
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
Coloring options: