J5_5DAT_009

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5DAT|1|2|U|128, 5DAT|1|2|U|132, 5DAT|1|2|C|136, 5DAT|1|2|U|137, 5DAT|1|2|A|140, 5DAT|1|2|U|141, 5DAT|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|A|124
5DAT|1|2|U|125
5DAT|1|2|A|126
5DAT|1|2|G|127
5DAT|1|2|U|128
5DAT|1|2|U|129
5DAT|1|2|C|130
5DAT|1|2|C|131
5DAT|1|2|U|132
5DAT|1|2|U|133
5DAT|1|2|U|134
5DAT|1|2|A|135
5DAT|1|2|C|136
5DAT|1|2|U|137
5DAT|1|2|A|138
5DAT|1|2|C|139
5DAT|1|2|A|140
5DAT|1|2|U|141
5DAT|1|2|G|142
5DAT|1|2|G|143
*
5DAT|1|2|C|172
5DAT|1|2|A|173
5DAT|1|2|U|174
5DAT|1|2|G|175
5DAT|1|2|C|176
5DAT|1|2|U|177
5DAT|1|2|U|178
5DAT|1|2|A|179
5DAT|1|2|A|180
5DAT|1|2|A|181
5DAT|1|2|A|182
*
5DAT|1|2|U|203
5DAT|1|2|G|204
*
5DAT|1|2|C|263
5DAT|1|2|G|264
5DAT|1|2|A|265
*
5DAT|1|2|U|289
5DAT|1|2|G|290
5DAT|1|2|G|291
5DAT|1|2|U|292
5DAT|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A