J5_5DC3_007

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUGU*AAAUAACG*UGGAAUGAG*CGAGGAACAAU*AUAG

Length

37 nucleotides

Bulged bases

5DC3|1|2|A|541, 5DC3|1|2|C|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|C|31
5DC3|1|2|U|32
5DC3|1|2|U|33
5DC3|1|2|G|34
5DC3|1|2|U|35
*
5DC3|1|2|A|473
5DC3|1|2|A|474
5DC3|1|2|A|475
5DC3|1|2|U|476
5DC3|1|2|A|477
5DC3|1|2|A|478
5DC3|1|2|C|479
5DC3|1|2|G|480
*
5DC3|1|2|U|508
5DC3|1|2|G|509
5DC3|1|2|G|510
5DC3|1|2|A|511
5DC3|1|2|A|512
5DC3|1|2|U|513
5DC3|1|2|G|514
5DC3|1|2|A|515
5DC3|1|2|G|516
*
5DC3|1|2|C|536
5DC3|1|2|G|537
5DC3|1|2|A|538
5DC3|1|2|G|539
5DC3|1|2|G|540
5DC3|1|2|A|541
5DC3|1|2|A|542
5DC3|1|2|C|543
5DC3|1|2|A|544
5DC3|1|2|A|545
5DC3|1|2|U|546
*
5DC3|1|2|A|592
5DC3|1|2|U|593
5DC3|1|2|A|594
5DC3|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A