J5_5DC3_011

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5DC3|1|2|U|638, 5DC3|1|2|U|639, 5DC3|1|2|U|694, 5DC3|1|2|C|696, 5DC3|1|2|C|697, 5DC3|1|2|U|813, 5DC3|1|2|G|815, 5DC3|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|A|636
5DC3|1|2|C|637
5DC3|1|2|U|638
5DC3|1|2|U|639
5DC3|1|2|U|640
5DC3|1|2|G|641
*
5DC3|1|2|U|693
5DC3|1|2|U|694
5DC3|1|2|U|695
5DC3|1|2|C|696
5DC3|1|2|C|697
5DC3|1|2|U|698
*
5DC3|1|2|A|740
5DC3|1|2|C|741
5DC3|1|2|U|742
5DC3|1|2|U|743
5DC3|1|2|U|744
*
5DC3|1|2|A|807
5DC3|1|2|U|808
5DC3|1|2|A|809
5DC3|1|2|G|810
5DC3|1|2|A|811
5DC3|1|2|A|812
5DC3|1|2|U|813
5DC3|1|2|A|814
5DC3|1|2|G|815
5DC3|1|2|G|816
5DC3|1|2|A|817
*
5DC3|1|2|U|854
5DC3|1|2|A|855
5DC3|1|2|A|856
5DC3|1|2|U|857
5DC3|1|2|G|858
5DC3|1|2|A|859
5DC3|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A