J5_5DFE_004

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5DFE|1|RA|U|273|||B, 5DFE|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DFE|1|RA|C|268
5DFE|1|RA|U|269
5DFE|1|RA|A|270
5DFE|1|RA|A|271
5DFE|1|RA|A|272|||A
5DFE|1|RA|C|272|||B
*
5DFE|1|RA|G|272|||V
5DFE|1|RA|G|272|||W
5DFE|1|RA|G|272|||X
5DFE|1|RA|U|272|||Y
5DFE|1|RA|C|272|||Z
5DFE|1|RA|G|273|||A
5DFE|1|RA|U|273|||B
5DFE|1|RA|G|273|||C
*
5DFE|1|RA|C|366
5DFE|1|RA|G|370
5DFE|1|RA|A|371
5DFE|1|RA|G|372
5DFE|1|RA|U|373
5DFE|1|RA|A|374
5DFE|1|RA|C|375
*
5DFE|1|RA|G|399
5DFE|1|RA|G|400
5DFE|1|RA|A|401
5DFE|1|RA|A|402
5DFE|1|RA|U|403
5DFE|1|RA|C|404
5DFE|1|RA|U|405
5DFE|1|RA|G|406
*
5DFE|1|RA|U|421
5DFE|1|RA|A|422
5DFE|1|RA|A|423
5DFE|1|RA|G|424

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9