3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAG*CGUAG*CGAG*CGCAAG*CAAAG
Length
24 nucleotides
Bulged bases
5DFE|1|RA|A|652|||C
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DFE|1|RA|C|601
5DFE|1|RA|G|602
5DFE|1|RA|A|603
5DFE|1|RA|G|604
*
5DFE|1|RA|C|624
5DFE|1|RA|G|625
5DFE|1|RA|U|626
5DFE|1|RA|A|627
5DFE|1|RA|G|628
*
5DFE|1|RA|C|635
5DFE|1|RA|G|636
5DFE|1|RA|A|637
5DFE|1|RA|G|638
*
5DFE|1|RA|C|650
5DFE|1|RA|G|651
5DFE|1|RA|C|652|||A
5DFE|1|RA|A|652|||B
5DFE|1|RA|A|652|||C
5DFE|1|RA|G|652|||D
*
5DFE|1|RA|C|652|||W
5DFE|1|RA|A|653
5DFE|1|RA|A|654
5DFE|1|RA|A|655
5DFE|1|RA|G|656

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15

Coloring options:

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