3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
5DFE|1|YA|A|2062, 5DFE|1|YA|A|2448, 5DFE|1|YA|U|2449, 5DFE|1|YA|U|2609
QA status
Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DFE|1|YA|A|2057
5DFE|1|YA|A|2058
5DFE|1|YA|A|2059
5DFE|1|YA|A|2060
5DFE|1|YA|G|2061
5DFE|1|YA|A|2062
5DFE|1|YA|C|2063
5DFE|1|YA|C|2064
*
5DFE|1|YA|G|2446
5DFE|1|YA|G|2447
5DFE|1|YA|A|2448
5DFE|1|YA|U|2449
5DFE|1|YA|A|2450
5DFE|1|YA|A|2451
5DFE|1|YA|C|2452
5DFE|1|YA|A|2453
*
5DFE|1|YA|U|2500
5DFE|1|YA|C|2501
5DFE|1|YA|G|2502
5DFE|1|YA|2MA|2503
5DFE|1|YA|U|2504
5DFE|1|YA|G|2505
5DFE|1|YA|U|2506
5DFE|1|YA|C|2507
*
5DFE|1|YA|G|2582
5DFE|1|YA|G|2583
5DFE|1|YA|U|2584
5DFE|1|YA|U|2585
5DFE|1|YA|C|2586
5DFE|1|YA|A|2587
5DFE|1|YA|G|2588
*
5DFE|1|YA|C|2606
5DFE|1|YA|G|2607
5DFE|1|YA|G|2608
5DFE|1|YA|U|2609
5DFE|1|YA|C|2610
5DFE|1|YA|U|2611

Current chains

Chain YA
T23S rRNA

Nearby chains

Chain XV
Transfer RNA; tRNA
Chain XY
Peptide chain release factor 2
Chain Y5
50S ribosomal protein L32
Chain YD
50S ribosomal protein L2
Chain YE
50S ribosomal protein L3
Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15
Chain YQ
50S ribosomal protein L16

Coloring options:

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