J5_5DGE_007

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5DGE|1|2|A|541, 5DGE|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|2|C|31
5DGE|1|2|U|32
5DGE|1|2|U|33
5DGE|1|2|G|34
5DGE|1|2|U|35
*
5DGE|1|2|A|473
5DGE|1|2|A|474
5DGE|1|2|A|475
5DGE|1|2|U|476
5DGE|1|2|A|477
5DGE|1|2|A|478
5DGE|1|2|C|479
*
5DGE|1|2|G|509
5DGE|1|2|G|510
5DGE|1|2|A|511
5DGE|1|2|A|512
5DGE|1|2|U|513
5DGE|1|2|G|514
5DGE|1|2|A|515
5DGE|1|2|G|516
*
5DGE|1|2|C|536
5DGE|1|2|G|537
5DGE|1|2|A|538
5DGE|1|2|G|539
5DGE|1|2|G|540
5DGE|1|2|A|541
5DGE|1|2|A|542
5DGE|1|2|C|543
5DGE|1|2|A|544
5DGE|1|2|A|545
5DGE|1|2|U|546
*
5DGE|1|2|A|592
5DGE|1|2|U|593
5DGE|1|2|A|594
5DGE|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A