J5_5DGE_010

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

5DGE|1|2|U|128, 5DGE|1|2|U|132, 5DGE|1|2|C|136, 5DGE|1|2|U|137, 5DGE|1|2|A|140, 5DGE|1|2|U|141, 5DGE|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|2|A|124
5DGE|1|2|U|125
5DGE|1|2|A|126
5DGE|1|2|G|127
5DGE|1|2|U|128
5DGE|1|2|U|129
5DGE|1|2|C|130
5DGE|1|2|C|131
5DGE|1|2|U|132
5DGE|1|2|U|133
5DGE|1|2|U|134
5DGE|1|2|A|135
5DGE|1|2|C|136
5DGE|1|2|U|137
5DGE|1|2|A|138
5DGE|1|2|C|139
5DGE|1|2|A|140
5DGE|1|2|U|141
5DGE|1|2|G|142
5DGE|1|2|G|143
*
5DGE|1|2|C|172
5DGE|1|2|A|173
5DGE|1|2|U|174
5DGE|1|2|G|175
5DGE|1|2|C|176
5DGE|1|2|U|177
5DGE|1|2|U|178
5DGE|1|2|A|179
5DGE|1|2|A|180
5DGE|1|2|A|181
5DGE|1|2|A|182
*
5DGE|1|2|U|203
5DGE|1|2|G|204
*
5DGE|1|2|C|263
5DGE|1|2|G|264
5DGE|1|2|A|265
5DGE|1|2|A|266
5DGE|1|2|U|267
*
5DGE|1|2|A|288
5DGE|1|2|U|289
5DGE|1|2|G|290
5DGE|1|2|G|291
5DGE|1|2|U|292
5DGE|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A