Loop J5_5DGE

3D structure

PDB id: 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å

Loop

Sequence: ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
Length: 44 nucleotides
Bulged bases: 5DGE|1|2|U|638, 5DGE|1|2|C|696, 5DGE|1|2|C|697, 5DGE|1|2|U|813, 5DGE|1|2|G|815, 5DGE|1|2|U|820, 5DGE|1|2|A|856
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5DGE|1|2|A|636
5DGE|1|2|C|637
5DGE|1|2|U|638
5DGE|1|2|U|639
5DGE|1|2|U|640
5DGE|1|2|G|641
*
5DGE|1|2|U|693
5DGE|1|2|U|694
5DGE|1|2|U|695
5DGE|1|2|C|696
5DGE|1|2|C|697
5DGE|1|2|U|698
*
5DGE|1|2|A|740
5DGE|1|2|C|741
5DGE|1|2|U|742
5DGE|1|2|U|743
5DGE|1|2|U|744
*
5DGE|1|2|A|807
5DGE|1|2|U|808
5DGE|1|2|A|809
5DGE|1|2|G|810
5DGE|1|2|A|811
5DGE|1|2|A|812
5DGE|1|2|U|813
5DGE|1|2|A|814
5DGE|1|2|G|815
5DGE|1|2|G|816
5DGE|1|2|A|817
5DGE|1|2|C|818
5DGE|1|2|G|819
5DGE|1|2|U|820
5DGE|1|2|U|821
5DGE|1|2|U|822
*
5DGE|1|2|A|850
5DGE|1|2|U|851
5DGE|1|2|C|852
5DGE|1|2|G|853
5DGE|1|2|U|854
5DGE|1|2|A|855
5DGE|1|2|A|856
5DGE|1|2|U|857
5DGE|1|2|G|858
5DGE|1|2|A|859
5DGE|1|2|U|860

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain C1: 40S ribosomal protein S11-A
Chain C3: 40S ribosomal protein S13
Chain D2: 40S ribosomal protein S22-A
Chain M9: 60S ribosomal protein L19-A
Chain S7: 40S ribosomal protein S7-A

J5_5DGE_011