J5_5DGE_019
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5DGE|1|6|A|93, 5DGE|1|6|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5DGE_019 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.0573
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5DGE|1|6|C|54
5DGE|1|6|A|55
5DGE|1|6|U|56
5DGE|1|6|G|57
*
5DGE|1|6|C|90
5DGE|1|6|G|91
5DGE|1|6|A|92
5DGE|1|6|A|93
5DGE|1|6|U|94
5DGE|1|6|G|95
5DGE|1|6|G|96
5DGE|1|6|C|97
*
5DGE|1|6|G|386
5DGE|1|6|A|387
5DGE|1|6|G|388
*
5DGE|1|6|C|409
5DGE|1|6|A|410
5DGE|1|6|C|411
*
5DGE|1|6|G|422
5DGE|1|6|G|423
5DGE|1|6|C|424
5DGE|1|6|A|425
5DGE|1|6|G|426
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain n3
- 60S ribosomal protein L23-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
- Chain s9
- 40S ribosomal protein S9-A
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