J5_5DGE_022

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5DGE|1|6|U|694, 5DGE|1|6|U|695, 5DGE|1|6|U|742, 5DGE|1|6|U|813, 5DGE|1|6|G|815, 5DGE|1|6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|6|A|636
5DGE|1|6|C|637
5DGE|1|6|U|638
5DGE|1|6|U|639
5DGE|1|6|U|640
5DGE|1|6|G|641
*
5DGE|1|6|U|693
5DGE|1|6|U|694
5DGE|1|6|U|695
5DGE|1|6|C|696
5DGE|1|6|C|697
5DGE|1|6|U|698
*
5DGE|1|6|A|740
5DGE|1|6|C|741
5DGE|1|6|U|742
5DGE|1|6|U|743
5DGE|1|6|U|744
*
5DGE|1|6|A|807
5DGE|1|6|U|808
5DGE|1|6|A|809
5DGE|1|6|G|810
5DGE|1|6|A|811
5DGE|1|6|A|812
5DGE|1|6|U|813
5DGE|1|6|A|814
5DGE|1|6|G|815
5DGE|1|6|G|816
5DGE|1|6|A|817
*
5DGE|1|6|U|854
5DGE|1|6|A|855
5DGE|1|6|A|856
5DGE|1|6|U|857
5DGE|1|6|G|858
5DGE|1|6|A|859
5DGE|1|6|U|860

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain m9

60S ribosomal protein L19-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A