J5_5DGV_006

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5DGV|1|2|A|541, 5DGV|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|2|C|31
5DGV|1|2|U|32
5DGV|1|2|U|33
5DGV|1|2|G|34
5DGV|1|2|U|35
*
5DGV|1|2|A|473
5DGV|1|2|A|474
5DGV|1|2|A|475
5DGV|1|2|U|476
5DGV|1|2|A|477
5DGV|1|2|A|478
5DGV|1|2|C|479
*
5DGV|1|2|G|509
5DGV|1|2|G|510
5DGV|1|2|A|511
5DGV|1|2|A|512
5DGV|1|2|U|513
5DGV|1|2|G|514
5DGV|1|2|A|515
5DGV|1|2|G|516
*
5DGV|1|2|C|536
5DGV|1|2|G|537
5DGV|1|2|A|538
5DGV|1|2|G|539
5DGV|1|2|G|540
5DGV|1|2|A|541
5DGV|1|2|A|542
5DGV|1|2|C|543
5DGV|1|2|A|544
5DGV|1|2|A|545
5DGV|1|2|U|546
*
5DGV|1|2|A|592
5DGV|1|2|U|593
5DGV|1|2|A|594
5DGV|1|2|G|595

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A