J5_5DGV_010

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5DGV|1|2|U|638, 5DGV|1|2|U|694, 5DGV|1|2|C|696, 5DGV|1|2|C|697, 5DGV|1|2|U|813, 5DGV|1|2|G|815, 5DGV|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|2|A|636
5DGV|1|2|C|637
5DGV|1|2|U|638
5DGV|1|2|U|639
5DGV|1|2|U|640
5DGV|1|2|G|641
*
5DGV|1|2|U|693
5DGV|1|2|U|694
5DGV|1|2|U|695
5DGV|1|2|C|696
5DGV|1|2|C|697
5DGV|1|2|U|698
*
5DGV|1|2|A|740
5DGV|1|2|C|741
5DGV|1|2|U|742
5DGV|1|2|U|743
5DGV|1|2|U|744
*
5DGV|1|2|A|807
5DGV|1|2|U|808
5DGV|1|2|A|809
5DGV|1|2|G|810
5DGV|1|2|A|811
5DGV|1|2|A|812
5DGV|1|2|U|813
5DGV|1|2|A|814
5DGV|1|2|G|815
5DGV|1|2|G|816
5DGV|1|2|A|817
*
5DGV|1|2|U|854
5DGV|1|2|A|855
5DGV|1|2|A|856
5DGV|1|2|U|857
5DGV|1|2|G|858
5DGV|1|2|A|859
5DGV|1|2|U|860

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A