J5_5DOX_002

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5DOX|1|1A|U|272|||A, 5DOX|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|1A|C|268
5DOX|1|1A|U|269
5DOX|1|1A|A|270
5DOX|1|1A|A|271
5DOX|1|1A|A|271|||A
5DOX|1|1A|C|271|||B
*
5DOX|1|1A|G|271|||V
5DOX|1|1A|G|271|||W
5DOX|1|1A|G|271|||X
5DOX|1|1A|U|271|||Y
5DOX|1|1A|C|271|||Z
5DOX|1|1A|G|272
5DOX|1|1A|U|272|||A
5DOX|1|1A|G|272|||B
*
5DOX|1|1A|C|366
5DOX|1|1A|G|370
5DOX|1|1A|A|371
5DOX|1|1A|G|372
5DOX|1|1A|U|373
5DOX|1|1A|A|374
5DOX|1|1A|C|375
*
5DOX|1|1A|G|399
5DOX|1|1A|G|400
5DOX|1|1A|A|401
5DOX|1|1A|A|402
5DOX|1|1A|U|403
5DOX|1|1A|C|404
5DOX|1|1A|U|405
5DOX|1|1A|G|406
*
5DOX|1|1A|U|421
5DOX|1|1A|A|422
5DOX|1|1A|A|423
5DOX|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9