J5_5DOX_014

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5DOX|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|2A|C|601
5DOX|1|2A|G|602
5DOX|1|2A|A|603
5DOX|1|2A|G|604
*
5DOX|1|2A|C|624
5DOX|1|2A|G|625
5DOX|1|2A|U|626
5DOX|1|2A|A|627
5DOX|1|2A|G|628
*
5DOX|1|2A|C|635
5DOX|1|2A|G|636
5DOX|1|2A|A|637
5DOX|1|2A|G|638
*
5DOX|1|2A|C|650
5DOX|1|2A|G|651
5DOX|1|2A|C|652
5DOX|1|2A|A|652|||A
5DOX|1|2A|A|652|||B
5DOX|1|2A|G|652|||C
*
5DOX|1|2A|C|652|||V
5DOX|1|2A|A|653
5DOX|1|2A|A|654
5DOX|1|2A|A|655
5DOX|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15