J5_5DOY_002
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5DOY|1|1A|U|272|||A, 5DOY|1|1A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOY|1|1A|C|268
5DOY|1|1A|U|269
5DOY|1|1A|A|270
5DOY|1|1A|A|271
5DOY|1|1A|A|271|||A
5DOY|1|1A|C|271|||B
*
5DOY|1|1A|G|271|||V
5DOY|1|1A|G|271|||W
5DOY|1|1A|G|271|||X
5DOY|1|1A|U|271|||Y
5DOY|1|1A|C|271|||Z
5DOY|1|1A|G|272
5DOY|1|1A|U|272|||A
5DOY|1|1A|G|272|||B
*
5DOY|1|1A|C|366
5DOY|1|1A|G|370
5DOY|1|1A|A|371
5DOY|1|1A|G|372
5DOY|1|1A|U|373
5DOY|1|1A|A|374
5DOY|1|1A|C|375
*
5DOY|1|1A|G|399
5DOY|1|1A|G|400
5DOY|1|1A|A|401
5DOY|1|1A|A|402
5DOY|1|1A|U|403
5DOY|1|1A|C|404
5DOY|1|1A|U|405
5DOY|1|1A|G|406
*
5DOY|1|1A|U|421
5DOY|1|1A|A|422
5DOY|1|1A|A|423
5DOY|1|1A|G|424
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S Ribosomal Protein L28
- Chain 1I
- 50S Ribosomal Protein L9
Coloring options: