Loop J5_5DOY

3D structure

PDB id: 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 5DOY|1|1A|A|2448, 5DOY|1|1A|U|2449, 5DOY|1|1A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5DOY|1|1A|A|2057
5DOY|1|1A|A|2058
5DOY|1|1A|A|2059
5DOY|1|1A|A|2060
5DOY|1|1A|G|2061
5DOY|1|1A|A|2062
5DOY|1|1A|C|2063
5DOY|1|1A|C|2064
*
5DOY|1|1A|G|2446
5DOY|1|1A|G|2447
5DOY|1|1A|A|2448
5DOY|1|1A|U|2449
5DOY|1|1A|A|2450
5DOY|1|1A|A|2451
5DOY|1|1A|C|2452
5DOY|1|1A|A|2453
*
5DOY|1|1A|U|2500
5DOY|1|1A|C|2501
5DOY|1|1A|G|2502
5DOY|1|1A|2MA|2503
5DOY|1|1A|U|2504
5DOY|1|1A|G|2505
5DOY|1|1A|U|2506
5DOY|1|1A|C|2507
*
5DOY|1|1A|G|2582
5DOY|1|1A|G|2583
5DOY|1|1A|U|2584
5DOY|1|1A|U|2585
5DOY|1|1A|C|2586
5DOY|1|1A|A|2587
5DOY|1|1A|G|2588
*
5DOY|1|1A|C|2606
5DOY|1|1A|G|2607
5DOY|1|1A|G|2608
5DOY|1|1A|U|2609
5DOY|1|1A|C|2610
5DOY|1|1A|U|2611

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 10: 50S Ribosomal Protein L27
Chain 15: 50S Ribosomal Protein L32
Chain 1D: 50S Ribosomal Protein L2
Chain 1E: 50S Ribosomal Protein L3
Chain 1F: 50S Ribosomal Protein L4
Chain 1P: 50S Ribosomal Protein L15
Chain 1Q: 50S Ribosomal Protein L16
Chain 1W: 50S Ribosomal Protein L22
Chain 1w: Transfer RNA; tRNA
Chain 1x: Transfer RNA; tRNA

J5_5DOY_006