J5_5DOY_014

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5DOY|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOY|1|2A|C|601
5DOY|1|2A|G|602
5DOY|1|2A|A|603
5DOY|1|2A|G|604
*
5DOY|1|2A|C|624
5DOY|1|2A|G|625
5DOY|1|2A|U|626
5DOY|1|2A|A|627
5DOY|1|2A|G|628
*
5DOY|1|2A|C|635
5DOY|1|2A|G|636
5DOY|1|2A|A|637
5DOY|1|2A|G|638
*
5DOY|1|2A|C|650
5DOY|1|2A|G|651
5DOY|1|2A|C|652
5DOY|1|2A|A|652|||A
5DOY|1|2A|A|652|||B
5DOY|1|2A|G|652|||C
*
5DOY|1|2A|C|652|||V
5DOY|1|2A|A|653
5DOY|1|2A|A|654
5DOY|1|2A|A|655
5DOY|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S Ribosomal Protein L35

Chain 2F

50S Ribosomal Protein L4

Chain 2P

50S Ribosomal Protein L15