J5_5E7K_004

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAACC*GGGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

35 nucleotides

Bulged bases

5E7K|1|14|U|271|||C, 5E7K|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E7K|1|14|C|268
5E7K|1|14|U|269
5E7K|1|14|A|270
5E7K|1|14|A|270|||A
5E7K|1|14|A|270|||B
5E7K|1|14|C|270|||C
5E7K|1|14|C|270|||D
*
5E7K|1|14|G|270|||V
5E7K|1|14|G|270|||W
5E7K|1|14|G|270|||X
5E7K|1|14|G|270|||Y
5E7K|1|14|U|270|||Z
5E7K|1|14|C|271|||A
5E7K|1|14|G|271|||B
5E7K|1|14|U|271|||C
5E7K|1|14|G|271
*
5E7K|1|14|C|366
5E7K|1|14|G|370
5E7K|1|14|A|371
5E7K|1|14|G|372
5E7K|1|14|U|373
5E7K|1|14|A|374
5E7K|1|14|C|375
*
5E7K|1|14|G|399
5E7K|1|14|G|400
5E7K|1|14|A|401
5E7K|1|14|A|402
5E7K|1|14|U|403
5E7K|1|14|C|404
5E7K|1|14|U|405
5E7K|1|14|G|406
*
5E7K|1|14|U|421
5E7K|1|14|A|422
5E7K|1|14|A|423
5E7K|1|14|G|424

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28