J5_5E7K_016

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E7K|1|1H|C|601
5E7K|1|1H|G|602
5E7K|1|1H|A|603
5E7K|1|1H|G|604
*
5E7K|1|1H|C|624
5E7K|1|1H|G|625
5E7K|1|1H|U|626
5E7K|1|1H|A|627
5E7K|1|1H|G|628
*
5E7K|1|1H|C|635
5E7K|1|1H|G|636
5E7K|1|1H|A|637
5E7K|1|1H|G|638
*
5E7K|1|1H|C|650
5E7K|1|1H|G|651
5E7K|1|1H|C|652
5E7K|1|1H|A|653
5E7K|1|1H|A|654
5E7K|1|1H|A|654|||A
5E7K|1|1H|C|654|||B
*
5E7K|1|1H|G|654|||S
5E7K|1|1H|A|654|||T
5E7K|1|1H|A|654|||U
5E7K|1|1H|A|654|||V
5E7K|1|1H|A|655
5E7K|1|1H|G|656

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35