J5_5E81_010

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUGG*CUUG*CUGAAC*GGUAAUAG*CGAGC

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E81|1|1G|G|35
5E81|1|1G|C|36
5E81|1|1G|U|37
5E81|1|1G|G|38
5E81|1|1G|G|39
*
5E81|1|1G|C|403
5E81|1|1G|U|404
5E81|1|1G|U|405
5E81|1|1G|G|406
*
5E81|1|1G|C|436
5E81|1|1G|U|437
5E81|1|1G|G|438
5E81|1|1G|A|439
5E81|1|1G|A|440
5E81|1|1G|C|442
*
5E81|1|1G|G|492
5E81|1|1G|G|493
5E81|1|1G|U|494
5E81|1|1G|A|495
5E81|1|1G|A|496
5E81|1|1G|U|497
5E81|1|1G|A|498
5E81|1|1G|G|500
*
5E81|1|1G|C|545
5E81|1|1G|G|546
5E81|1|1G|A|547
5E81|1|1G|G|548
5E81|1|1G|C|549

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12