J5_5EL6_016

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1H|C|601
5EL6|1|1H|G|602
5EL6|1|1H|A|603
5EL6|1|1H|G|604
*
5EL6|1|1H|C|624
5EL6|1|1H|G|625
5EL6|1|1H|U|626
5EL6|1|1H|A|627
5EL6|1|1H|G|628
*
5EL6|1|1H|C|635
5EL6|1|1H|G|636
5EL6|1|1H|A|637
5EL6|1|1H|G|638
*
5EL6|1|1H|C|650
5EL6|1|1H|G|651
5EL6|1|1H|C|652
5EL6|1|1H|A|653
5EL6|1|1H|A|654
5EL6|1|1H|A|654|||A
5EL6|1|1H|C|654|||B
*
5EL6|1|1H|G|654|||S
5EL6|1|1H|A|654|||T
5EL6|1|1H|A|654|||U
5EL6|1|1H|A|654|||V
5EL6|1|1H|A|655
5EL6|1|1H|G|656

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35