J5_5EL7_010

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5EL7_010 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1136

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1G|C|36
5EL7|1|1G|U|37
5EL7|1|1G|G|38
5EL7|1|1G|G|39
*
5EL7|1|1G|C|403
5EL7|1|1G|U|404
5EL7|1|1G|U|405
5EL7|1|1G|G|406
*
5EL7|1|1G|C|436
5EL7|1|1G|U|437
5EL7|1|1G|G|438
5EL7|1|1G|A|439
5EL7|1|1G|A|440
5EL7|1|1G|C|442
5EL7|1|1G|C|443
*
5EL7|1|1G|G|491
5EL7|1|1G|G|492
5EL7|1|1G|G|493
5EL7|1|1G|U|494
5EL7|1|1G|A|495
5EL7|1|1G|A|496
5EL7|1|1G|U|497
5EL7|1|1G|A|498
5EL7|1|1G|G|500
*
5EL7|1|1G|C|545
5EL7|1|1G|G|546
5EL7|1|1G|A|547
5EL7|1|1G|G|548

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12