J5_5EL7_013

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5EL7|1|1H|U|271|||C, 5EL7|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1H|C|268
5EL7|1|1H|U|269
5EL7|1|1H|A|270
5EL7|1|1H|A|270|||A
5EL7|1|1H|A|270|||B
5EL7|1|1H|C|270|||C
*
5EL7|1|1H|G|270|||W
5EL7|1|1H|G|270|||X
5EL7|1|1H|G|270|||Y
5EL7|1|1H|U|270|||Z
5EL7|1|1H|C|271|||A
5EL7|1|1H|G|271|||B
5EL7|1|1H|U|271|||C
5EL7|1|1H|G|271
*
5EL7|1|1H|C|366
5EL7|1|1H|G|370
5EL7|1|1H|A|371
5EL7|1|1H|G|372
5EL7|1|1H|U|373
5EL7|1|1H|A|374
5EL7|1|1H|C|375
*
5EL7|1|1H|G|399
5EL7|1|1H|G|400
5EL7|1|1H|A|401
5EL7|1|1H|A|402
5EL7|1|1H|U|403
5EL7|1|1H|C|404
5EL7|1|1H|U|405
5EL7|1|1H|G|406
*
5EL7|1|1H|U|421
5EL7|1|1H|A|422
5EL7|1|1H|A|423
5EL7|1|1H|G|424

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28