J5_5EL7_016

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

5EL7|1|1H|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1H|C|601
5EL7|1|1H|G|602
5EL7|1|1H|A|603
5EL7|1|1H|G|604
*
5EL7|1|1H|C|624
5EL7|1|1H|G|625
5EL7|1|1H|U|626
5EL7|1|1H|A|627
5EL7|1|1H|G|628
*
5EL7|1|1H|C|635
5EL7|1|1H|G|636
5EL7|1|1H|A|637
5EL7|1|1H|G|638
*
5EL7|1|1H|C|650
5EL7|1|1H|G|651
5EL7|1|1H|C|652
5EL7|1|1H|A|653
5EL7|1|1H|A|654
5EL7|1|1H|A|654|||A
5EL7|1|1H|C|654|||B
*
5EL7|1|1H|G|654|||S
5EL7|1|1H|A|654|||T
5EL7|1|1H|A|654|||U
5EL7|1|1H|A|654|||V
5EL7|1|1H|A|655
5EL7|1|1H|G|656

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35