J5_5F8K_011

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5F8K|1|2A|U|272|||A, 5F8K|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|268
5F8K|1|2A|U|269
5F8K|1|2A|A|270
5F8K|1|2A|A|271
5F8K|1|2A|A|271|||A
5F8K|1|2A|C|271|||B
*
5F8K|1|2A|G|271|||V
5F8K|1|2A|G|271|||W
5F8K|1|2A|G|271|||X
5F8K|1|2A|U|271|||Y
5F8K|1|2A|C|271|||Z
5F8K|1|2A|G|272
5F8K|1|2A|U|272|||A
5F8K|1|2A|G|272|||B
*
5F8K|1|2A|C|366
5F8K|1|2A|G|370
5F8K|1|2A|A|371
5F8K|1|2A|G|372
5F8K|1|2A|U|373
5F8K|1|2A|A|374
5F8K|1|2A|C|375
*
5F8K|1|2A|G|399
5F8K|1|2A|G|400
5F8K|1|2A|A|401
5F8K|1|2A|A|402
5F8K|1|2A|U|403
5F8K|1|2A|C|404
5F8K|1|2A|U|405
5F8K|1|2A|G|406
*
5F8K|1|2A|U|421
5F8K|1|2A|A|422
5F8K|1|2A|A|423
5F8K|1|2A|G|424

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9