J5_5F8K_014

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5F8K|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|601
5F8K|1|2A|G|602
5F8K|1|2A|A|603
5F8K|1|2A|G|604
*
5F8K|1|2A|C|624
5F8K|1|2A|G|625
5F8K|1|2A|U|626
5F8K|1|2A|A|627
5F8K|1|2A|G|628
*
5F8K|1|2A|C|635
5F8K|1|2A|G|636
5F8K|1|2A|A|637
5F8K|1|2A|G|638
*
5F8K|1|2A|C|650
5F8K|1|2A|G|651
5F8K|1|2A|C|652
5F8K|1|2A|A|652|||A
5F8K|1|2A|A|652|||B
5F8K|1|2A|G|652|||C
*
5F8K|1|2A|C|652|||V
5F8K|1|2A|A|653
5F8K|1|2A|A|654
5F8K|1|2A|A|655
5F8K|1|2A|G|656

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15