Loop J5_5F8K

3D structure

PDB id: 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 5F8K|1|2A|A|2062, 5F8K|1|2A|A|2448, 5F8K|1|2A|U|2449, 5F8K|1|2A|U|2506, 5F8K|1|2A|U|2585, 5F8K|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5F8K|1|2A|A|2057
5F8K|1|2A|A|2058
5F8K|1|2A|A|2059
5F8K|1|2A|A|2060
5F8K|1|2A|G|2061
5F8K|1|2A|A|2062
5F8K|1|2A|C|2063
5F8K|1|2A|C|2064
*
5F8K|1|2A|G|2446
5F8K|1|2A|G|2447
5F8K|1|2A|A|2448
5F8K|1|2A|U|2449
5F8K|1|2A|A|2450
5F8K|1|2A|A|2451
5F8K|1|2A|C|2452
5F8K|1|2A|A|2453
*
5F8K|1|2A|U|2500
5F8K|1|2A|C|2501
5F8K|1|2A|G|2502
5F8K|1|2A|2MA|2503
5F8K|1|2A|U|2504
5F8K|1|2A|G|2505
5F8K|1|2A|U|2506
5F8K|1|2A|C|2507
*
5F8K|1|2A|G|2582
5F8K|1|2A|G|2583
5F8K|1|2A|U|2584
5F8K|1|2A|U|2585
5F8K|1|2A|C|2586
5F8K|1|2A|A|2587
5F8K|1|2A|G|2588
*
5F8K|1|2A|C|2606
5F8K|1|2A|G|2607
5F8K|1|2A|G|2608
5F8K|1|2A|U|2609
5F8K|1|2A|C|2610
5F8K|1|2A|U|2611

Current chains

Chain 2A: 23S ribosomal RNA

Nearby chains

Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2x: Transfer RNA; tRNA
Chain 2y: Cathelicidin-3

J5_5F8K_016