J5_5FCI_007

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5FCI|1|2|A|541, 5FCI|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCI|1|2|C|31
5FCI|1|2|U|32
5FCI|1|2|U|33
5FCI|1|2|G|34
5FCI|1|2|U|35
*
5FCI|1|2|A|473
5FCI|1|2|A|474
5FCI|1|2|A|475
5FCI|1|2|U|476
5FCI|1|2|A|477
5FCI|1|2|A|478
5FCI|1|2|C|479
*
5FCI|1|2|G|509
5FCI|1|2|G|510
5FCI|1|2|A|511
5FCI|1|2|A|512
5FCI|1|2|U|513
5FCI|1|2|G|514
5FCI|1|2|A|515
5FCI|1|2|G|516
*
5FCI|1|2|C|536
5FCI|1|2|G|537
5FCI|1|2|A|538
5FCI|1|2|G|539
5FCI|1|2|G|540
5FCI|1|2|A|541
5FCI|1|2|A|542
5FCI|1|2|C|543
5FCI|1|2|A|544
5FCI|1|2|A|545
5FCI|1|2|U|546
*
5FCI|1|2|A|592
5FCI|1|2|U|593
5FCI|1|2|A|594
5FCI|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A