J5_5FCI_009

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5FCI|1|2|U|128, 5FCI|1|2|U|132, 5FCI|1|2|C|136, 5FCI|1|2|U|137, 5FCI|1|2|A|138, 5FCI|1|2|A|140, 5FCI|1|2|U|141, 5FCI|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCI|1|2|A|124
5FCI|1|2|U|125
5FCI|1|2|A|126
5FCI|1|2|G|127
5FCI|1|2|U|128
5FCI|1|2|U|129
5FCI|1|2|C|130
5FCI|1|2|C|131
5FCI|1|2|U|132
5FCI|1|2|U|133
5FCI|1|2|U|134
5FCI|1|2|A|135
5FCI|1|2|C|136
5FCI|1|2|U|137
5FCI|1|2|A|138
5FCI|1|2|C|139
5FCI|1|2|A|140
5FCI|1|2|U|141
5FCI|1|2|G|142
5FCI|1|2|G|143
*
5FCI|1|2|C|172
5FCI|1|2|A|173
5FCI|1|2|U|174
5FCI|1|2|G|175
5FCI|1|2|C|176
5FCI|1|2|U|177
5FCI|1|2|U|178
5FCI|1|2|A|179
5FCI|1|2|A|180
5FCI|1|2|A|181
5FCI|1|2|A|182
*
5FCI|1|2|U|203
5FCI|1|2|G|204
*
5FCI|1|2|C|263
5FCI|1|2|G|264
5FCI|1|2|A|265
*
5FCI|1|2|U|289
5FCI|1|2|G|290
5FCI|1|2|G|291
5FCI|1|2|U|292
5FCI|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A