J5_5FCI_011

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5FCI|1|2|U|638, 5FCI|1|2|U|639, 5FCI|1|2|U|694, 5FCI|1|2|C|696, 5FCI|1|2|C|697, 5FCI|1|2|U|813, 5FCI|1|2|G|815, 5FCI|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCI|1|2|A|636
5FCI|1|2|C|637
5FCI|1|2|U|638
5FCI|1|2|U|639
5FCI|1|2|U|640
5FCI|1|2|G|641
*
5FCI|1|2|U|693
5FCI|1|2|U|694
5FCI|1|2|U|695
5FCI|1|2|C|696
5FCI|1|2|C|697
5FCI|1|2|U|698
*
5FCI|1|2|A|740
5FCI|1|2|C|741
5FCI|1|2|U|742
5FCI|1|2|U|743
5FCI|1|2|U|744
*
5FCI|1|2|A|807
5FCI|1|2|U|808
5FCI|1|2|A|809
5FCI|1|2|G|810
5FCI|1|2|A|811
5FCI|1|2|A|812
5FCI|1|2|U|813
5FCI|1|2|A|814
5FCI|1|2|G|815
5FCI|1|2|G|816
5FCI|1|2|A|817
*
5FCI|1|2|U|854
5FCI|1|2|A|855
5FCI|1|2|A|856
5FCI|1|2|U|857
5FCI|1|2|G|858
5FCI|1|2|A|859
5FCI|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A