J5_5FCJ_009

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5FCJ|1|2|U|128, 5FCJ|1|2|U|132, 5FCJ|1|2|U|133, 5FCJ|1|2|C|136, 5FCJ|1|2|U|137, 5FCJ|1|2|A|138, 5FCJ|1|2|A|140, 5FCJ|1|2|U|141, 5FCJ|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCJ|1|2|A|124
5FCJ|1|2|U|125
5FCJ|1|2|A|126
5FCJ|1|2|G|127
5FCJ|1|2|U|128
5FCJ|1|2|U|129
5FCJ|1|2|C|130
5FCJ|1|2|C|131
5FCJ|1|2|U|132
5FCJ|1|2|U|133
5FCJ|1|2|U|134
5FCJ|1|2|A|135
5FCJ|1|2|C|136
5FCJ|1|2|U|137
5FCJ|1|2|A|138
5FCJ|1|2|C|139
5FCJ|1|2|A|140
5FCJ|1|2|U|141
5FCJ|1|2|G|142
5FCJ|1|2|G|143
*
5FCJ|1|2|C|172
5FCJ|1|2|A|173
5FCJ|1|2|U|174
5FCJ|1|2|G|175
5FCJ|1|2|C|176
5FCJ|1|2|U|177
5FCJ|1|2|U|178
5FCJ|1|2|A|179
5FCJ|1|2|A|180
5FCJ|1|2|A|181
5FCJ|1|2|A|182
*
5FCJ|1|2|U|203
5FCJ|1|2|G|204
*
5FCJ|1|2|C|263
5FCJ|1|2|G|264
5FCJ|1|2|A|265
*
5FCJ|1|2|U|289
5FCJ|1|2|G|290
5FCJ|1|2|G|291
5FCJ|1|2|U|292
5FCJ|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A