J5_5FCJ_011

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5FCJ|1|2|U|638, 5FCJ|1|2|C|696, 5FCJ|1|2|C|697, 5FCJ|1|2|U|813, 5FCJ|1|2|G|815, 5FCJ|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCJ|1|2|A|636
5FCJ|1|2|C|637
5FCJ|1|2|U|638
5FCJ|1|2|U|639
5FCJ|1|2|U|640
5FCJ|1|2|G|641
*
5FCJ|1|2|U|693
5FCJ|1|2|U|694
5FCJ|1|2|U|695
5FCJ|1|2|C|696
5FCJ|1|2|C|697
5FCJ|1|2|U|698
*
5FCJ|1|2|A|740
5FCJ|1|2|C|741
5FCJ|1|2|U|742
5FCJ|1|2|U|743
5FCJ|1|2|U|744
*
5FCJ|1|2|A|807
5FCJ|1|2|U|808
5FCJ|1|2|A|809
5FCJ|1|2|G|810
5FCJ|1|2|A|811
5FCJ|1|2|A|812
5FCJ|1|2|U|813
5FCJ|1|2|A|814
5FCJ|1|2|G|815
5FCJ|1|2|G|816
5FCJ|1|2|A|817
*
5FCJ|1|2|U|854
5FCJ|1|2|A|855
5FCJ|1|2|A|856
5FCJ|1|2|U|857
5FCJ|1|2|G|858
5FCJ|1|2|A|859
5FCJ|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A