J5_5FDU_006
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5FDU|1|1A|A|2084, 5FDU|1|1A|A|2460, 5FDU|1|1A|U|2461, 5FDU|1|1A|U|2597, 5FDU|1|1A|U|2621
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FDU|1|1A|A|2079
5FDU|1|1A|A|2080
5FDU|1|1A|A|2081
5FDU|1|1A|A|2082
5FDU|1|1A|G|2083
5FDU|1|1A|A|2084
5FDU|1|1A|C|2085
5FDU|1|1A|C|2086
*
5FDU|1|1A|G|2458
5FDU|1|1A|G|2459
5FDU|1|1A|A|2460
5FDU|1|1A|U|2461
5FDU|1|1A|A|2462
5FDU|1|1A|A|2463
5FDU|1|1A|C|2464
5FDU|1|1A|A|2465
*
5FDU|1|1A|U|2512
5FDU|1|1A|C|2513
5FDU|1|1A|G|2514
5FDU|1|1A|2MA|2515
5FDU|1|1A|U|2516
5FDU|1|1A|G|2517
5FDU|1|1A|U|2518
5FDU|1|1A|C|2519
*
5FDU|1|1A|G|2594
5FDU|1|1A|G|2595
5FDU|1|1A|U|2596
5FDU|1|1A|U|2597
5FDU|1|1A|C|2598
5FDU|1|1A|A|2599
5FDU|1|1A|G|2600
*
5FDU|1|1A|C|2618
5FDU|1|1A|G|2619
5FDU|1|1A|G|2620
5FDU|1|1A|U|2621
5FDU|1|1A|C|2622
5FDU|1|1A|U|2623
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1D
- 50S ribosomal protein L2
- Chain 1E
- 50S ribosomal protein L3
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1W
- 50S ribosomal protein L22
- Chain 1y
- Metalnikowin I
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